Special

HsaEX6071314 @ hg19

Exon Skipping

Gene
Description
nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:13389]
Coordinates
chr14:52485779-52494062:-
Coord C1 exon
chr14:52493919-52494062
Coord A exon
chr14:52486777-52486896
Coord C2 exon
chr14:52485779-52486012
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTGACCTCTGCAGATG
3' ss Score
11.2
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGATCACCCCACCTGCCAACCCCTGTGAGGATGGCAGTCATACCTGTGCTCCTGCTGGGCAGGCCCGGTGTGTTCACCATGGAGGCAGCACGTTCAGCTGTGCCTGCCTGCCTGGTTATGCCGGCGATGGGCACCAGTGCACTG
Seq A exon
ATGTAGATGAATGCTCAGAAAACAGATGTCACCCTGCAGCTACCTGCTACAATACTCCTGGTTCCTTCTCCTGCCGTTGTCAACCCGGATATTATGGGGATGGATTTCAGTGCATACCTG
Seq C2 exon
ACTCCACCTCAAGCCTGACACCCTGTGAACAACAGCAGCGCCATGCCCAGGCCCAGTATGCCTACCCTGGGGCCCGGTTCCACATCCCCCAATGCGACGAGCAGGGCAACTTCCTGCCCCTACAGTGTCATGGCAGCACTGGTTTCTGCTGGTGCGTGGACCCTGATGGTCATGAAGTTCCTGGTACCCAGACTCCACCTGGCTCCACCCCGCCTCACTGTGGACCATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087303-'19-21,'19-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.291
Domain overlap (PFAM):

C1:
PF126622=cEGF=PU(81.8=36.7)
A:
PF126622=cEGF=PD(13.6=7.3),PF129472=EGF_3=WD(100=82.9)
C2:
PF0008613=Thyroglobulin_1=WD(100=83.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGCAGTCATACCTGTGC
R:
ACACTGTAGGGGCAGGAAGTT
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains