RnoEX0059805 @ rn6
Exon Skipping
Gene
ENSRNOG00000000341 | Nid2
Description
nidogen 2 [Source:RGD Symbol;Acc:1311685]
Coordinates
chr15:4905300-4912082:-
Coord C1 exon
chr15:4911939-4912082
Coord A exon
chr15:4906314-4906433
Coord C2 exon
chr15:4905300-4905548
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCGTCCTTGACCTCTGCAGATG
3' ss Score
9.84
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGATCGCCCCACCTCCCAACCCTTGCCTGGATGGCAGTCACACCTGTGCCCCTGAGGGGCAGGCCCGGTGCATTCACCATGGAGGCAGTTCGTTCAGCTGTGCCTGCCTGCCCGGCTTTGTTGGCACCGGGCACCAGTGTTCTG
Seq A exon
ATGTTGACGAATGTGCGGAAAACAGATGTCATGGGGCAGCCATCTGTTACAATACCCCCGGGTCCTTCTCCTGCCGGTGCCAGCCTGGGTACCACGGGGACGGGTTTCACTGCGCCTCTG
Seq C2 exon
ACACAGTTCCAGAAGATTCCATCTCAGGACTGAAACCCTGTGAATACCAGCAGCGCTATGCCCAGGCACAGCATGCCCACGCTGGGTCACGGATCCACATCCCCCAGTGCGACGACCAGGGAAACTTTGTGCCGCTGCAGTGCCATGGCAGCACTGGCTTCTGCTGGTGTGTGGACCAAAATGGCCATGAAGTCCCTGGCACCCAGACTCCACCTGGCTCCACTCCGCCCCACTGTGGACCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000341-'24-22,'24-21,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=79.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=92.7)
C2:
PF0008613=Thyroglobulin_1=WD(100=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGGCAGTTCGTTCAG
R:
ATGGCCATTTTGGTCCACACA
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]