BtaEX6053659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58054081-58058106:+
Coord C1 exon
chr10:58054081-58054224
Coord A exon
chr10:58057292-58057373
Coord C2 exon
chr10:58057999-58058106
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTCTTATTTCAAAGGCA
3' ss Score
6.56
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
TCAATTGGAAATGCTAAAACAACCAGGAATGATAATAGTAGCCGTTTTGGGAAGTACATTGAGATTGGTTTTGATAAGAGATATCGAATCATCGGTGCCAATATGAGAACTTACCTTTTAGAGAAATCCAGAGTGGTGTTCCAG
Seq A exon
GCAGAAGAGGAGAGAAACTATCATATCTTCTATCAACTTTGTGCCTCAGCAGACTTATCTGAATTTAAAGTGCTGCGATTAG
Seq C2 exon
GAGATGCAAATAACTTTCATTACACGAATCAAGGTGGCAGTCCTGTGATTGAAGGAGTAGATGATGCCAAGGAGATGGCACATACCAGGCAGGCCTGCACTTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATGCTAAAACAACCAGGA
R:
GACTGCCACCTTGATTCGTGT
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]