RnoEX0057370 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82059791-82065175:+
Coord C1 exon
chr8:82059791-82059934
Coord A exon
chr8:82064229-82064310
Coord C2 exon
chr8:82065068-82065175
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTCTTATTTCAAAGGCA
3' ss Score
6.56
5' ss Seq
TAGGTATGC
5' ss Score
7.53
Exon sequences
Seq C1 exon
TCAATTGGAAATGCTAAAACAACCAGGAATGATAATAGCAGCCGGTTTGGGAAATATATTGAAATTGGTTTTGACAAGAGATATCGAATCATCGGTGCCAATATGAGAACTTACCTTTTAGAGAAATCCAGAGTGGTGTTCCAG
Seq A exon
GCAGAAGAGGAGAGAAACTACCATATCTTCTATCAGCTCTGTGCTTCGGCAAAGCTACCTGAGTTTAAGATGCTGCGGTTAG
Seq C2 exon
GAAATGCAGATAGTTTCCATTACACGAAGCAAGGAGGCAGCCCTATGATAGAAGGAGTGGACGATGCGAAGGAGATGGCACACACCAGGCAGGCCTGCACTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866-'11-14,'11-12,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGCAGCCGGTTTGGGAAA
R:
CTTCGCATCGTCCACTCCTTC
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]