MmuEX0030524 @ mm9
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:74984150-74989349:+
Coord C1 exon
chr9:74984150-74984293
Coord A exon
chr9:74988455-74988536
Coord C2 exon
chr9:74989242-74989349
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTCTTATTTCAAAGGCA
3' ss Score
6.56
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
TCAATTGGAAATGCCAAAACAACCAGGAATGATAATAGCAGCCGGTTTGGAAAATATATTGAAATTGGTTTTGACAAGAGGTACAGAATCATCGGTGCCAATATGAGAACTTACCTTTTAGAGAAATCCAGAGTGGTGTTCCAG
Seq A exon
GCAGAAGAGGAGAGAAACTACCATATCTTCTATCAGCTCTGTGCTTCGGCAAAGTTACCTGAGTTTAAAATGCTGCGGTTAG
Seq C2 exon
GAAATGCAGATAGTTTTCATTACACGAAGCAAGGAGGCAGCCCTATGATAGAAGGAGTAGATGATGCGAAGGAGATGGCGCACACCAGGCAGGCCTGCACTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-'7-9,'7-6,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATGCCAAAACAACCAGG
R:
CTGCCTCCTTGCTTCGTGTAA
Band lengths:
179-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: