DreEX0048703 @ danRer10
Exon Skipping
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:38967102-38986177:+
Coord C1 exon
chr18:38967102-38967245
Coord A exon
chr18:38979318-38979399
Coord C2 exon
chr18:38986070-38986177
Length
82 bp
Sequences
Splice sites
3' ss Seq
TATGTACTTTTGTTTTCCAGGCG
3' ss Score
10.01
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
TCTATTGGTAACGCCAAGACCACCAGGAATGACAACAGCAGTCGATTTGGGAAATACATTGAGATTGGCTTTGATAAGAAGTATCACATCATTGGTGCGAACATGAGGACATATCTGCTGGAGAAATCACGTGTGGTGTTTCAG
Seq A exon
GCGGATGAAGAGAGGAATTATCATATCTTCTATCAGCTCTGTGCATCGGCTCACCTCCCGGAGTTTAAAGCCCTGAAACTCG
Seq C2 exon
GAAAGGCTAATGATTTCCACTACACAAAACAGGGCAGGAATCCAGTCATAGATGGAGTAGATGATGCCAAGGAGATGTCTACCACCAGGAACGCCTTCATACTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCAGGAATGACAACAGC
R:
ATGACTGGATTCCTGCCCTGT
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]