HsaEX0041197 @ hg38
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52407292-52410476:-
Coord C1 exon
chr15:52410333-52410476
Coord A exon
chr15:52408059-52408140
Coord C2 exon
chr15:52407292-52407399
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTCTTATTTCGAAGGCA
3' ss Score
6.08
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
TCCATTGGAAATGCTAAAACAACCAGGAATGATAATAGCAGCCGTTTTGGGAAGTATATTGAGATTGGTTTTGATAAGAGATATCGAATCATTGGTGCCAATATGAGAACTTATCTTTTAGAGAAATCCAGAGTGGTATTCCAG
Seq A exon
GCAGAAGAGGAGAGAAACTATCATATCTTCTATCAGCTTTGTGCCTCAGCAAAGTTACCTGAATTTAAAATGCTACGATTAG
Seq C2 exon
GAAATGCAGATAACTTTAATTACACAAAACAAGGAGGCAGTCCTGTGATTGAAGGAGTGGATGATGCAAAGGAGATGGCACATACTAGGCAGGCCTGCACTTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535_MULTIEX3-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.5=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
ENST00000358212fB20575
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCAGCCGTTTTGGGAAGT
R:
CTCCTTCAATCACAGGACTGCC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development