GgaEX1038132 @ galGal3
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10027463-10030220:+
Coord C1 exon
chr10:10027463-10027606
Coord A exon
chr10:10028735-10028816
Coord C2 exon
chr10:10030113-10030220
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCAACCTCTTTCTTTTAAAGGCA
3' ss Score
9.55
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
TCCATTGGAAATGCCAAAACAACGAGGAATGACAACAGCAGTCGCTTTGGGAAATACATTGAAATTGGTTTTGACAAGAGGTATCGAATCATTGGTGCTAACATGAGAACTTATCTCTTGGAGAAATCAAGAGTGGTATTTCAG
Seq A exon
GCAGAAGAGGAGAGGAATTACCACATCTTTTACCAACTCTGTGCCTCTGCAGCATTACCTGAATTTAAAACTCTACGATTAG
Seq C2 exon
GGAATGCAAATTACTTTCATTATACAAAGCAAGGTGGAAGCCCTGTGATTGATGGCATTGATGATGCTAAGGAAATGGTAAACACCAGACAAGCCTGCACTTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGACAACAGCAGTCGC
R:
TGCCATCAATCACAGGGCTTC
Band lengths:
177-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]