BtaEX6055346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008083 | SEL1L
Description
Bos taurus sel-1 suppressor of lin-12-like (C. elegans) (SEL1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001206908]
Coordinates
chr10:93919544-93923687:-
Coord C1 exon
chr10:93923631-93923687
Coord A exon
chr10:93921276-93921344
Coord C2 exon
chr10:93919544-93919621
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCATAAATTCCTTCTCGCAGAGA
3' ss Score
8.59
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTGGTCTGGGACAGCTGCACCTGCACGGCGGCCGTGGAGTGGAACAAAACCATCAG
Seq A exon
AGAGCATTTGACTACTTCAACTTAGCAGCGAATGCTGGCAATTCCCACGCCATGGCCTTCTTGGGAAAG
Seq C2 exon
ATGTACTCAGAAGGAAGTGATATTGTACCTCAGAGTAACGAGACGGCTCTTCACTACTTTAAAAAGGCTGCTGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008083-'15-20,'15-19,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(48.6=100)
A:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
C2:
PF082387=Sel1=FE(67.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAGCTGCACCTGC
R:
CATGTCAGCAGCCTTTTTAAAGT
Band lengths:
128-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]