RnoEX0079186 @ rn6
Exon Skipping
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115584810-115590195:-
Coord C1 exon
chr6:115590139-115590195
Coord A exon
chr6:115586609-115586677
Coord C2 exon
chr6:115584810-115584887
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTTATAATTCTTTCACAGAGA
3' ss Score
7.97
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTGGTCTGGGACAGCTGCATCTGCATGGAGGGCGTGGAGTAGAACAGAATCACCAG
Seq A exon
AGAGCGTTTGACTACTTCAACTTAGCAGCAAATGCTGGCAATTCACATGCTATGGCCTTCCTGGGAAAG
Seq C2 exon
ATGTATTCTGAGGGAAGTGACATCGTGCCTCAGAGTAACGAGACGGCACTTCACTACTTCAAGAAAGCTGCTGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-'21-20,'21-19,24-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(48.6=100)
A:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
C2:
PF082387=Sel1=FE(67.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAGCTGCATCTGC
R:
CATGTCAGCAGCTTTCTTGAAGT
Band lengths:
128-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]