DreEX6045407 @ danRer10
Exon Skipping
Gene
ENSDARG00000004581 | sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041001-122]
Coordinates
chr20:27094987-27095821:+
Coord C1 exon
chr20:27094987-27095043
Coord A exon
chr20:27095578-27095646
Coord C2 exon
chr20:27095744-27095821
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCATTGTATTTCAGCGG
3' ss Score
8.65
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GTTGGTCTGGGTCAGTTACACCTACATGGAGGAAGAGGTGTAGAGCAAAATCACCAG
Seq A exon
CGGGCCTACGAGTACTTCAACCAGGCAGCAAACGCTGGGAACACACATGCTATGGCCTTCCTTGGAAAG
Seq C2 exon
ATGTACTCTGAAGGTAGTGAGTATGTGCCTCAGAACAATGAGACAGCACTACATTATTTCAAGAAGGCTGCAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004581-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(48.6=100)
A:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
C2:
PF082387=Sel1=FE(67.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTCTGGGTCAGTTACACC
R:
CAAGTCTGCAGCCTTCTTGAA
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]