HsaEX0057014 @ hg19
Exon Skipping
Gene
ENSG00000071537 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:10717]
Coordinates
chr14:81956732-81961481:-
Coord C1 exon
chr14:81961425-81961481
Coord A exon
chr14:81958824-81958892
Coord C2 exon
chr14:81956732-81956809
Length
69 bp
Sequences
Splice sites
3' ss Seq
AATAAATTCTTTTCTCATAGAGA
3' ss Score
6.07
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTGGTCTTGGACAACTGCACCTGCACGGAGGGCGTGGAGTAGAACAGAATCATCAG
Seq A exon
AGAGCATTTGACTACTTCAATTTAGCAGCAAATGCTGGCAATTCACATGCCATGGCCTTTTTGGGAAAG
Seq C2 exon
ATGTATTCGGAAGGAAGTGACATTGTACCTCAGAGTAATGAGACAGCTCTCCACTACTTTAAGAAAGCTGCTGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(48.6=100)
A:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
C2:
PF082387=Sel1=FE(67.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTCTTGGACAACTGCAC
R:
CATGTCAGCAGCTTTCTTAAAGT
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)