MmuEX6082369 @ mm10
Exon Skipping
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:91818219-91823590:-
Coord C1 exon
chr12:91823534-91823590
Coord A exon
chr12:91820042-91820110
Coord C2 exon
chr12:91818219-91818296
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTTATAATTCTCTCACAGAGA
3' ss Score
8.09
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTGGCCTGGGACAGCTGCATCTGCATGGAGGGCGTGGAGTAGAACAGAATCACCAG
Seq A exon
AGAGCGTTTGACTACTTCAACTTAGCAGCAAATGCTGGCAATTCACATGCTATGGCCTTCCTGGGAAAG
Seq C2 exon
ATGTATTCTGAAGGAAGTGACATCGTACCTCAGAGTAATGAGACGGCACTTCACTACTTTAAGAAAGCTGCTGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-'21-17,'21-16,23-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(48.6=100)
A:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
C2:
PF082387=Sel1=FE(67.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAGCTGCATCTGC
R:
CATGTCAGCAGCTTTCTTAAAGT
Band lengths:
128-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types