GgaEX0015775 @ galGal4
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr5:40228749-40231010:-
Coord C1 exon
chr5:40230954-40231010
Coord A exon
chr5:40229956-40230024
Coord C2 exon
chr5:40228749-40228826
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATACTTGTTTTCCTCTACAGCGC
3' ss Score
10.51
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTGGTCTTGGACAGTTGCACTTGCATGGAGGAAGAGGAGTAGAGCAAAATCATCAG
Seq A exon
CGCGCATTTGAGTACTTTAATCAAGCAGCTAATGCTGGCAACTCACATGCCATGGCCTTTCTAGGAAAG
Seq C2 exon
ATGTACTCAGAAGGAAGTGATGTTGTACCTCAGAATAATGAAACAGCTCTTCAGTATTTCAAGAAAGCTGCTGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(48.6=100)
A:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
C2:
PF082387=Sel1=FE(67.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTCTTGGACAGTTGCAC
R:
CATATCAGCAGCTTTCTTGAAATACT
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]