BtaEX6055352 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008083 | SEL1L
Description
Bos taurus sel-1 suppressor of lin-12-like (C. elegans) (SEL1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001206908]
Coordinates
chr10:93912235-93915421:-
Coord C1 exon
chr10:93915256-93915421
Coord A exon
chr10:93913349-93913423
Coord C2 exon
chr10:93912235-93912407
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCATTTTCCTTGCAGGAG
3' ss Score
11.35
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTGTTTAAGAATGTATGTGAGCGGGGCCGGTGGTCCGAGCGGCTCATGACTGCTTACAGCAGCTACAAGGACGGGGACTCCAACGCCGCCGTGATCCAGTACCTCCTGCTGGCCGAGCAGGGCTACGAGGTGGCACAGAGCAACGCAGCCTTCATCCTCGACCAGA
Seq A exon
GAGAAGCGACCATTGTAGGTGAGAATGAAACTTATCCCAGAGCTTTGCTTCACTGGAACCGGGCCGCCTCACAAG
Seq C2 exon
GCTATACTGTGGCTAGAATCAAGCTTGGAGACTACCACTTCTATGGCTTCGGCACGGATGTGGATTACGAGACTGCGTTTATCCACTATCGTCTCGCGTCTGAGCAGCAGCACAGCGCACAGGCCATGTTTAACCTGGGCTACATGCATGAGAAAGGACTGGGCATTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008083-'21-26,'21-25,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAGGACGGGGACTCCAA
R:
CTCGTAATCCACATCCGTGCC
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]