GgaEX0015776 @ galGal3
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
NA
Coordinates
chr5:43385246-43387472:-
Coord C1 exon
chr5:43387307-43387472
Coord A exon
chr5:43386509-43386583
Coord C2 exon
chr5:43385246-43385418
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGAATTAATTTCTTCTCTAGAAG
3' ss Score
6.96
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TTGTTTAAGAATGTTTGTGAACGTGGACGCTGGTCTGAAAGACTTATGACTGCCTACAACAGCTATAAAGATGGCGATTCAAATTCTGCTGTTGTTCAGTATCTTCTTTTGGCAGAACAAGGCTATGAAGTTGCACAAAGCAATGCTGCTTTCATACTTGATCAAA
Seq A exon
AAGAAGCTAGCATAGTAGGAGAAAATGAAACATATCCTCGAGCATTGCTTCACTGGAATAGAGCAGCTTCTCAAG
Seq C2 exon
GATATACAGTTGCAAGAATTAAACTTGGAGATTACCATTTCTATGGATTTGGTACTGATGTTGATTATGAAACAGCATTTATTCACTATCGACTGGCATCAGAGCAACAGCACAGTGCTCAAGCAATGTTTAATCTGGGCTACATGCATGAGAAGGGATTGGGCATCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-'22-24,'22-22,23-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTTTGGCAGAACAAGGCT
R:
GTTGCTCTGATGCCAGTCGAT
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]