GgaEX0015776 @ galGal4
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr5:40223452-40225678:-
Coord C1 exon
chr5:40225513-40225678
Coord A exon
chr5:40224715-40224789
Coord C2 exon
chr5:40223452-40223624
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGAATTAATTTCTTCTCTAGAAG
3' ss Score
6.96
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TTGTTTAAGAATGTTTGTGAACGTGGACGCTGGTCTGAAAGACTTATGACTGCCTACAACAGCTATAAAGATGGCGATTCAAATTCTGCTGTTGTTCAGTATCTTCTTTTGGCAGAACAAGGCTATGAAGTTGCACAAAGCAATGCTGCTTTCATACTTGATCAAA
Seq A exon
AAGAAGCTAGCATAGTAGGAGAAAATGAAACATATCCTCGAGCATTGCTTCACTGGAATAGAGCAGCTTCTCAAG
Seq C2 exon
GATATACAGTTGCAAGAATTAAACTTGGAGATTACCATTTCTATGGATTTGGTACTGATGTTGATTATGAAACAGCATTTATTCACTATCGACTGGCATCAGAGCAACAGCACAGTGCTCAAGCAATGTTTAATCTGGGCTACATGCATGAGAAGGGATTGGGCATCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-'23-28,'23-26,24-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTTTGGCAGAACAAGGCT
R:
GTTGCTCTGATGCCAGTCGAT
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]