HsaEX6072410 @ hg19
Exon Skipping
Gene
ENSG00000071537 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:10717]
Coordinates
chr14:81950569-81952798:-
Coord C1 exon
chr14:81952633-81952798
Coord A exon
chr14:81952016-81952090
Coord C2 exon
chr14:81950569-81950741
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCTTTTCCTGTAGGAG
3' ss Score
10.76
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTGTTTAAGAATGTATGTGAACGAGGCCGTTGGTCTGAAAGGCTTATGACTGCCTATAACAGCTATAAAGATGGCGATTACAATGCTGCAGTGATCCAGTACCTCCTCCTGGCTGAACAGGGCTATGAAGTGGCACAAAGCAATGCAGCCTTTATTCTTGATCAGA
Seq A exon
GAGAAGCAAGCATTGTAGGTGAGAATGAAACTTATCCCAGAGCTTTGCTACATTGGAACAGGGCCGCCTCTCAAG
Seq C2 exon
GCTATACTGTGGCTAGAATTAAGCTCGGAGACTACCATTTCTATGGGTTTGGCACCGATGTAGATTATGAAACTGCATTTATTCATTACCGTCTGGCTTCTGAGCAGCAACACAGTGCACAAGCTATGTTTAATCTGGGATATATGCATGAGAAAGGACTGGGCATTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGGCTATGAAGTGGCAC
R:
TAGCTTGTGCACTGTGTTGCT
Band lengths:
177-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)