DreEX0064946 @ danRer10
Exon Skipping
Gene
ENSDARG00000004581 | sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041001-122]
Coordinates
chr20:27098788-27100449:+
Coord C1 exon
chr20:27098788-27098953
Coord A exon
chr20:27099684-27099758
Coord C2 exon
chr20:27100277-27100449
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTGTGTGTCTTGCAGAGG
3' ss Score
11.09
5' ss Seq
AAGGTTAAA
5' ss Score
2.7
Exon sequences
Seq C1 exon
CTCTTCAAGAACGTGTGCGAGCGCGGCCGCTGGTCTGAGAGACTCATGGCGGCCTACAGAAGCTTTAAGGAGGGTGATATGGACTCTGCTCTTATTCAGTATCTCCTGTTGGCAGAACAGGGCTATGAGGTTGCACAGAGCAATGTGGCCTTCGTCCTTGATCAAA
Seq A exon
AGGGGTCGCAGATCTTCAATGAAAATGAAACATACCCACGGGCTTTGCTTCATTGGACCAGAGCAGCTGCTCAAG
Seq C2 exon
GTTACACCGTTGCCCGAATCAAGCTGGGCGACTACCATTTCTATGGCTATGGCACTGATGTAGACTATGAGACTGCAGTGATTCACTATCGGCTGGCCTCTGAGCAGCAGCATAGTGCACAGGCTATGTTCAACCTGGGTTATATGCATGAGAAGGGCCTTGGGATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004581-'19-20,'19-18,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCTATGAGGTTGCACAG
R:
ATAGCCTGTGCACTATGCTGC
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]