MmuEX6082375 @ mm9
Exon Skipping
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:93052272-93053579:-
Coord C1 exon
chr12:93053414-93053579
Coord A exon
chr12:93053059-93053133
Coord C2 exon
chr12:93052272-93052444
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTTCACGTCTCTCCTGTAGGAG
3' ss Score
9.33
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTGTTTAAGAATGTGTGTGAGCGAGGTCGCTGGTCAGAGAGACTGATGACTGCCTACAACAGCTATAAGGATGAGGACTACAATGCTGCAGTGGTCCAGTACCTCCTGCTGGCTGAGCAGGGCTACGAGGTGGCGCAGAGCAACGCAGCCTTCATCCTCGACCAGA
Seq A exon
GAGAAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCTTTACTGCATTGGAACAGGGCCGCCTCCCAAG
Seq C2 exon
GTTACACTGTGGCTAGAATTAAGCTTGGAGACTACCACTTCTATGGCTTTGGCACTGATGTGGATTATGAGACCGCATTTATTCATTACCGCCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCTGGGCTACATGCACGAGAAGGGCCTAGGCATTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-'22-20,'22-19,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTCATCCTCGACCAGA
R:
TAGGCCCTTCTCGTGCATGTA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: