BtaEX6055989 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21780685-21789145:+
Coord C1 exon
chr12:21780685-21780765
Coord A exon
chr12:21781802-21781907
Coord C2 exon
chr12:21789054-21789145
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGACCTCTGTTGTTTTGCAGAAT
3' ss Score
9.3
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GACAGCCTGTATTATTTTGGAGAACGGCGAACAGATAAATCCACTAGCAGTAAATTTCAGGGAATAGAGACTCCTTCTCAG
Seq A exon
AATAGATTCGTTGGATATTTTGCAATGGTGAAAAATATCTACAATTTGACTCTTCCTCCAATAAAAAAACTCACGATCAAAAAATTCGTGATTTATTCAATTCATG
Seq C2 exon
GTGTTGGAAAAGGCAATGGACATGATCTAAAAGTACAAATAATAATGCAACGAAAGACTGTCTTTTTCTGTTCTGCTTCCAAAAACTGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PD(17.3=81.5)
A:
PF104094=PTEN_C2=PU(12.5=47.2)
C2:
PF104094=PTEN_C2=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGTATTATTTTGGAGAACGGC
R:
CCTACAGTTTTTGGAAGCAGAACA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]