RnoEX0093126 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74578564-74591174:-
Coord C1 exon
chr16:74591094-74591174
Coord A exon
chr16:74581802-74581907
Coord C2 exon
chr16:74578564-74578655
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGGCTTCTGTTGCTTTGCAGAAT
3' ss Score
9.12
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GCAAGTCTGTACTTTTTTGGAGAGCGACGGACAGATAAAAGTAACAGCTCTAAGTTTCAAGGAGTAGAGACCCCTTCTCAG
Seq A exon
AATAGATATGTTAAATATTTTGAAAAACTGAAAACTAGCTACCAATTGACTCTTCCTCCAAAAAAAGTACTTGTGATAAAAAGATTCACTGTTTACTCCATTCATG
Seq C2 exon
GTGTTGGAAAAGGCAATGGAAGTGATCTAGAAATACAAATAATGATGTGGCAGGAGACGATTTTTTCCTGTTTTAATTCCAAAAATTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'29-33,'29-31,30-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PD(16.9=77.8)
A:
PF104094=PTEN_C2=PU(12.6=47.2)
C2:
PF104094=PTEN_C2=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGAGAGCGACGGACAG
R:
AAATCGTCTCCTGCCACATCA
Band lengths:
131-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]