GgaEX0025318 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BUX1]
Coordinates
chr1:169799339-169801199:+
Coord C1 exon
chr1:169799339-169799419
Coord A exon
chr1:169800384-169800489
Coord C2 exon
chr1:169801102-169801199
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTTTTTGCATTACAGAGT
3' ss Score
7.71
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GAGAGTTTAGACTACTTTGGAGAGAGAAGAACTGACAGAACTATGAGTACCAAATTTCAAGGAGTTGAAACTCCATCCCAG
Seq A exon
AGTAGGTATGTTGGGTATTATGAGATCCTGAAAAACAAGTATAACTTCCAACTCCCACCAGAGAGACAACTCAAAATAAAAAACCTCAAAATCCACTCTATACATG
Seq C2 exon
GAGTTGGGAAAGGCAATGGAACTGATATGAAGGTGCAGATAATAATGAAAAAGCAAGTTGTGTTGGAATGTGTGTGTGCCACACAAGGAAACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PD(17.2=81.5)
A:
PF104094=PTEN_C2=PU(12.3=47.2)
C2:
PF104094=PTEN_C2=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTTTAGACTACTTTGGAGAGA
R:
TTGCAGTTTCCTTGTGTGGCA
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]