MmuEX6034802 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22351443-22359486:+
Coord C1 exon
chr8:22351443-22351523
Coord A exon
chr8:22355466-22355571
Coord C2 exon
chr8:22359395-22359486
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGGCCTCTGTTGCTTTGCAGAAT
3' ss Score
9.1
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAAAGTCTGTACTTTTTTGGAGAGCGGCGGACAGATAAAAGCAACAGCTCGAAGTTCCAAGGAATAGAGACCCCTTCTCAG
Seq A exon
AATAGATATGTGAAATATTTTGAAAAACTGAAAATTAACTACCAACTAACTCTCCCTCCCAAAAAAGTACTCGTGATAAAAAGATTGGTCGTTTATTCCATTCATG
Seq C2 exon
GCGTTGGAAAAGGCGACGGGAGTGACCTGGAAGTACAAATCATAATGTGGCAGGAGACTGTTTTTTCCTTTTGTAATTCCAGGAATTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'28-29,'28-24,31-29=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PD(17.6=81.5)
A:
PF104094=PTEN_C2=PU(12.6=47.2)
C2:
PF104094=PTEN_C2=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGGCGGACAGATAAAA
R:
CATACAATTCCTGGAATTACAAAAGG
Band lengths:
154-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types