DreEX0080911 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24730827-24735718:+
Coord C1 exon
chr10:24730827-24730907
Coord A exon
chr10:24731204-24731309
Coord C2 exon
chr10:24735621-24735718
Length
106 bp
Sequences
Splice sites
3' ss Seq
GTTGGGTTGTGCATTTGCAGAGC
3' ss Score
5.79
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GAGAGCCTGGATTACTTTGGAGAGAGACGGACTGATAAAAGCATGAGCTCCAAGTTTCAAGGTGTTGAAACTCCGTCTCAG
Seq A exon
AGCAGGTATGTTGGCTATTATGAGATCATGAAGAATCAGTACAACCGTCAGCTTCCTCCTCGGAAGAGCCTGAAAATCAAGAGCATCCGAATCCACTCCATCGCAG
Seq C2 exon
GTGTGGGGAAGGGCAACGGCAGTGACCTGAAACTGAAGATCATAGTGAAGCACGAGCTTGTTTTCCAGTGTGTTTGTGCCAAACAGCACAACTGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985-'18-21,'18-19,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PD(17.1=81.5)
A:
PF104094=PTEN_C2=PU(12.3=47.2)
C2:
PF104094=PTEN_C2=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCTGGATTACTTTGGAGA
R:
TGGCACAAACACACTGGAAAAC
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]