GgaEX0025318 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:174778771-174780631:+
Coord C1 exon
chr1:174778771-174778851
Coord A exon
chr1:174779816-174779921
Coord C2 exon
chr1:174780534-174780631
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTTTTTGCATTACAGAGT
3' ss Score
7.71
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GAGAGTTTAGACTACTTTGGAGAGAGAAGAACTGACAGAACTATGAGTACCAAATTTCAAGGAGTTGAAACTCCATCCCAG
Seq A exon
AGTAGGTATGTTGGGTATTATGAGATCCTGAAAAACAAGTATAACTTCCAACTCCCACCAGAGAGACAACTCAAAATAAAAAACCTCAAAATCCACTCTATACATG
Seq C2 exon
GAGTTGGGAAAGGCAATGGAACTGATATGAAGGTGCAGATAATAATGAAAAAGCAAGTTGTGTTGGAATGTGTGTGTGCCACACAAGGAAACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'16-13,'16-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PD(17.2=81.5)
A:
PF104094=PTEN_C2=PU(12.3=47.2)
C2:
PF104094=PTEN_C2=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTTTAGACTACTTTGGAGAGA
R:
TTGCAGTTTCCTTGTGTGGCA
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]