BtaEX6056528 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr12:33757643-33776421:-
Coord C1 exon
chr12:33776343-33776421
Coord A exon
chr12:33759060-33759121
Coord C2 exon
chr12:33757643-33757699
Length
62 bp
Sequences
Splice sites
3' ss Seq
GTAACTTCTTTGTTTTTCAGATA
3' ss Score
10.04
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTTCTGGGGTCACTGCATCAACGCCTTGGTCCACTCACTCATCCTGTTCTGGTTTCCCATGAAAGCGCTGGAGCATG
Seq A exon
ATACTGTGTTGGCCAATGGTCATGCCACAGACTATTTATTTGTTGGAAATATCGTTTATACT
Seq C2 exon
TATGTTGTTGTTACTGTTTGTCTGAAAGCTGGTTTGGAGACGACAGCTTGGACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529-'50-52,'50-51,51-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=FE(22.4=100)
A:
PF038578=Colicin_im=FE(17.2=100)
C2:
PF038578=Colicin_im=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGGTCACTGCATCAAC
R:
TTTGGTCCAAGCTGTCGTCTC
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]