GgaEX6006298 @ galGal3
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
NA
Coordinates
chr1:181229249-181233056:+
Coord C1 exon
chr1:181229249-181229327
Coord A exon
chr1:181232619-181232680
Coord C2 exon
chr1:181233000-181233056
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGACAATTTTTCTTTTTCAGATG
3' ss Score
11.89
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTTCTGGGGTCACTGCATCAATGCCCTGATCCATTCCATCATTCTCTTCTGGTTTCCACTGAAAGTACTGGAGCATG
Seq A exon
ATGCAGTATTCACAAATGGGCAGGGAATCGACTATTTATTTGTTGGGAACATAGTTTACACT
Seq C2 exon
TATGTTGTAGTCACTGTTTGCCTAAAAGCTGGCTTGGAAACAACTGCATGGACTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=FE(22.6=100)
A:
PF038578=Colicin_im=FE(17.4=100)
C2:
PF038578=Colicin_im=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTGGGGTCACTGCATCA
R:
GTCCATGCAGTTGTTTCCAAGC
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]