MmuEX6041899 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:59773701-59791259:-
Coord C1 exon
chr14:59791181-59791259
Coord A exon
chr14:59773961-59774022
Coord C2 exon
chr14:59773701-59773757
Length
62 bp
Sequences
Splice sites
3' ss Seq
GTGGCTTCTTTGTTTTCCAGATA
3' ss Score
9.49
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTTTTCTGGGGTCACTGCATCAATGCCTTGGTTCATTCCCTCATCCTCTTCTGGGTTCCCATGAAAGCGCTGGAGCATG
Seq A exon
ATACTCCAGTAACCAGCGGTCATGCCACAGACTATTTGTTTGTTGGAAATATTGTTTACACG
Seq C2 exon
TACGTTGTGGTTACAGTTTGTTTGAAAGCTGGTTTGGAGACGACAGCTTGGACGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'65-57,'65-56,68-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=FE(22.4=100)
A:
PF038578=Colicin_im=FE(17.2=100)
C2:
PF038578=Colicin_im=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGGTCACTGCATCAATG
R:
TTTCGTCCAAGCTGTCGTCTC
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types