DreEX0016069 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21249254-21258642:-
Coord C1 exon
chr24:21258564-21258642
Coord A exon
chr24:21258428-21258489
Coord C2 exon
chr24:21249254-21249310
Length
62 bp
Sequences
Splice sites
3' ss Seq
GCCCTTTTTTGTTTCTTCAGACA
3' ss Score
9.6
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTCTTTTGGGGTCACTGTATAAATGCTCTCATTCACTCCATTATTCTCTTCTGGTTTCCACTTAAAGCCTTGGAGCACG
Seq A exon
ACACTCCTTTCGACAACGGCAACAGTGTGGACTACCTGTTTGTGGGGAACATCGTCTACACG
Seq C2 exon
TATGTCGTGGTAACTGTATGTCTGAAAGCCGGTATGGAGACCACAGCATGGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'42-38,'42-37,43-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=FE(22.4=100)
A:
PF038578=Colicin_im=FE(17.2=100)
C2:
PF038578=Colicin_im=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTCACTGTATAAATGCTCT
R:
CCATGCTGTGGTCTCCATACC
Band lengths:
124-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]