HsaEX6039638 @ hg38
Exon Skipping
Gene
ENSG00000132932 | ATP8A2
Description
ATPase phospholipid transporting 8A2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr13:25839546-25860860:+
Coord C1 exon
chr13:25839546-25839624
Coord A exon
chr13:25860195-25860256
Coord C2 exon
chr13:25860804-25860860
Length
62 bp
Sequences
Splice sites
3' ss Seq
GTAACTTCTTTGTTTTTCAGATA
3' ss Score
10.04
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTTTTCTGGGGTCACTGCATCAACGCCTTGGTCCACTCCCTCATCCTCTTCTGGTTTCCCATGAAAGCTCTGGAGCATG
Seq A exon
ATACTGTGTTGACAAGTGGTCATGCTACCGACTATTTATTTGTTGGAAATATTGTTTACACA
Seq C2 exon
TATGTTGTTGTTACTGTTTGTCTGAAAGCTGGTTTGGAGACCACAGCTTGGACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932-'75-70,'75-69,77-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=FE(22.4=100)
A:
PF038578=Colicin_im=FE(17.2=100)
C2:
PF038578=Colicin_im=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGGTCACTGCATCAAC
R:
CCAAGCTGTGGTCTCCAAACC
Band lengths:
127-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains