MmuEX6041899 @ mm9
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60392538-60410096:-
Coord C1 exon
chr14:60410018-60410096
Coord A exon
chr14:60392798-60392859
Coord C2 exon
chr14:60392538-60392594
Length
62 bp
Sequences
Splice sites
3' ss Seq
GTGGCTTCTTTGTTTTCCAGATA
3' ss Score
9.49
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTTTTCTGGGGTCACTGCATCAATGCCTTGGTTCATTCCCTCATCCTCTTCTGGGTTCCCATGAAAGCGCTGGAGCATG
Seq A exon
ATACTCCAGTAACCAGCGGTCATGCCACAGACTATTTGTTTGTTGGAAATATTGTTTACACG
Seq C2 exon
TACGTTGTGGTTACAGTTTGTTTGAAAGCTGGTTTGGAGACGACAGCTTGGACGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'39-40,'39-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=FE(22.4=100)
A:
PF038578=Colicin_im=FE(17.2=100)
C2:
PF038578=Colicin_im=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGGTCACTGCATCAATG
R:
TTTCGTCCAAGCTGTCGTCTC
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: