RnoEX6051977 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40090993-40100680:-
Coord C1 exon
chr15:40100602-40100680
Coord A exon
chr15:40091234-40091295
Coord C2 exon
chr15:40090993-40091049
Length
62 bp
Sequences
Splice sites
3' ss Seq
GTGGCTTCTTTGTTTTCCAGATA
3' ss Score
9.49
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTTTTCTGGGGTCACTGCATCAATGCCTTGGTCCACTCCCTCATCCTCTTCTGGGTTCCAATGAAAGCGCTGGAGCACG
Seq A exon
ATACTCCGCTAACCAGTGGTCACGCCACAGACTATTTGTTTGTTGGAAATATTGTTTACACG
Seq C2 exon
TACGTTGTGGTCACAGTTTGTTTGAAAGCTGGTTTGGAGACGACAGCTTGGACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'55-51,'55-50,56-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=FE(22.4=100)
A:
PF038578=Colicin_im=FE(17.2=100)
C2:
PF038578=Colicin_im=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTGGGGTCACTGCATCA
R:
AGTCCAAGCTGTCGTCTCCAA
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]