BtaEX6056551 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34177965-34183268:+
Coord C1 exon
chr12:34177965-34177993
Coord A exon
chr12:34181571-34181687
Coord C2 exon
chr12:34183106-34183268
Length
117 bp
Sequences
Splice sites
3' ss Seq
TAACACTTTCTCTTTTTCAGGTT
3' ss Score
12.27
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
TCGGGATGGAACACATCCGTACGACCAAG
Seq A exon
GTTGAGCAAGTGAAGTTACTTGACCGGTTCAGTACCAGCAACAAGTCGTTAACAGGAACACTGTATCTCACAGCCACGCATCTGCTGTTCATAGATGCTCATCAGAAAGAAACCTGG
Seq C2 exon
ATACTGCACCACCATATTGCCTCAGTGGAGAAGCTCGCTCTAACGACTTCTGGGTGCCCCCTGGTGATCCAGTGCAAGAACTTCCGGACCGTGCACTTCATCGTTCCCAGAGAGAGAGACTGCCACGATATTTACAACTCTCTGTTGCAGCTGTCAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACATCCGTACGACCAA
R:
GCTTTGACAGCTGCAACAGAG
Band lengths:
182-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]