GgaEX0025450 @ galGal4
Exon Skipping
Gene
ENSGALG00000017112 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr1:176338945-176345251:+
Coord C1 exon
chr1:176338945-176339761
Coord A exon
chr1:176343041-176343157
Coord C2 exon
chr1:176345089-176345251
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGCCATATTTTTCTTACAGGTA
3' ss Score
11.41
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TTTCCAACCCCAATGATTCTGATTCTGCTCCGCACAAGGCATAAGGAACCAGGGAATGATTCTTTTTCCCCACAGTCTCCCTAATAGCAGCTGCCAGGAGAGGTTCTGCAGCCAGCACTGAGCTCCACAGCTCATAGGACTGCACGCTCATTCCCTTCTTCCCCGACCGCAGCTCCCAGAGGGACTCCCTGAAACACTGCGAGGCGCTACCAGACGCATTAAGGAAAAACAGCGCACCACCACGCAGGCCCTTATGCTGCCTTCACACCCCCAATATGGCGCCACCTCCTGAAGGCGCATGCGCAGGAAGTCGTGACGAGGCGCTGCGCACCCTCCCGCCGCCAGGGGGCGCTGCAAGCAGTTAGGGCAGGCTCCGCCCGGCCCCGCCTCGCCCCGCCCCGGAAGCGGCAGTAGGTGACGGCCGGCCCGGCCCGGCGGCGGTACGCTCTGTTTTCAGCCGCGCGCTCGGGGTCGTCATGGAGCACATCCGCACCACCAAG
Seq A exon
GTAGAGCACGTGAAATTACTGGATAGGTTCAGCACCAGCAATAAGTCTCTGACAGGAACTCTGTACCTTACAGCAACCCATCTGTTATTCATAGATGCAAACCAGAGGGAGACTTGG
Seq C2 exon
ATATTACATCATCACATTGCTGCAGTGGAAAAGCTTCCCTTGACTACTTCTGGCTGCCCCCTTGTCATCCAGTGTAAGAACTTCAGAGTAGTCCACTTTGTTGTTCCCAGAGAGAGAGATTGTCATGACATCTACAACTCCTTACTGCAGCTGTCAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112_MULTIEX1-1/10=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATATGGCGCCACCTCCTGAA
R:
TCCACTGCAGCAATGTGATGA
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]