MmuEX0030104 @ mm9
Exon Skipping
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60884065-60900931:+
Coord C1 exon
chr14:60884065-60884198
Coord A exon
chr14:60895966-60896082
Coord C2 exon
chr14:60900774-60900931
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTTTTCTTTCTTAGGTT
3' ss Score
12.24
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GGTGGCTGACGCTGCCGGGTTGAGGGAGTTCCTGCGGGTGGCTGTCACCGCCCCGTTTCTCTCCCGATGGTGCTCTCCTGAGGCCAGCTGCCTGCGGGCGTCGCCCCGGGATGGAGCACATCCGGACAACCAAG
Seq A exon
GTTGAACAAGTAAAGTTACTTGACCGGTTTAGTACCAACAACAAGTCACTGACAGGAACACTGTATCTTACGGCCACACACCTATTATTTATTGACGCTCAGCAAAAAGAAACCTGG
Seq C2 exon
CAAAATATGAAGATCTCTATGCCTTCTCTTATAATCCCAAGCAAAATGATACTGAACGACGGAATGGTTGGCAGCTTATTGACCTTGCTGCGGAGTATGAGAGGATGGGAGTGCCCAATGCAAACTGGCAACTGTCGGATGCCAACCGAGAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF066029=Myotub-related=PU(14.0=90.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGGTTGAGGGAGTTC
R:
CAGTTGCCAGTTTGCATTGGG
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: