DreEX0047908 @ danRer10
Exon Skipping
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24887166-24896001:+
Coord C1 exon
chr24:24887166-24887383
Coord A exon
chr24:24891242-24891361
Coord C2 exon
chr24:24895839-24896001
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGCTTTTCTTTACAGGTA
3' ss Score
12.73
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
ACTGAGACACGCCCCAAGTAGGAAGTGCTGAGTGGAGCAACAGAAACTGTTAGCTGCTAGTAGAAGAGATGTTTTGAACGTGGCTTCAAACGGAGGCGGATTTATTCTTCATTTGTTCATCCGATGTGTGAACGCGTCTGTTTCGGATACTGTCATCCATTCCTTGTGCCGACCACGCTGAAAACAGCGGCATAATGGAGCACATCCGCACACCAAAG
Seq A exon
GTAGAACAAGTTAAGCTGCTGGATCGCTTTAGCAACAAGTCGGTCACAGGAACGCTGCATCTGACGGCCACACATTTGATCTTCGTGGAGAATAATTCAACTAGCTCCCAGGAGATATGG
Seq C2 exon
ATCCTGCATCACCACATCGCCTCCGTGGAGAAGCTGTCCCTTACAACCACTGGCTGCCCACTCCTCATTCAGTGCCGAAATTTCCGAGTAGTCCACTTTGTGATTCCAAGAGAGCGGGACTGCCACGACATCTACAGCTCTCTGCTTAGGCTTCTGAGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0107915=Hint=PU(5.9=37.5),PF116053=Vps36_ESCRT-II=PU(4.2=25.0)
A:
PF0107915=Hint=FE(76.5=100),PF116053=Vps36_ESCRT-II=FE(81.2=100)
C2:
PF116053=Vps36_ESCRT-II=PD(30.4=30.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAGTGCTGAGTGGAGCA
R:
CCAGTGGTTGTAAGGGACAGC
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]