Special

MmuEX0030104 @ mm10

Exon Skipping

Gene
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60265205-60282094:+
Coord C1 exon
chr14:60265205-60265361
Coord A exon
chr14:60277129-60277245
Coord C2 exon
chr14:60281937-60282094
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTTTTCTTTCTTAGGTT
3' ss Score
12.24
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TGCGCAGTGCCACCGGCGGCGGGGGTGGCTGACGCTGCCGGGTTGAGGGAGTTCCTGCGGGTGGCTGTCACCGCCCCGTTTCTCTCCCGATGGTGCTCTCCTGAGGCCAGCTGCCTGCGGGCGTCGCCCCGGGATGGAGCACATCCGGACAACCAAG
Seq A exon
GTTGAACAAGTAAAGTTACTTGACCGGTTTAGTACCAACAACAAGTCACTGACAGGAACACTGTATCTTACGGCCACACACCTATTATTTATTGACGCTCAGCAAAAAGAAACCTGG
Seq C2 exon
CAAAATATGAAGATCTCTATGCCTTCTCTTATAATCCCAAGCAAAATGATACTGAACGACGGAATGGTTGGCAGCTTATTGACCTTGCTGCGGAGTATGAGAGGATGGGAGTGCCCAATGCAAACTGGCAACTGTCGGATGCCAACCGAGAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF066029=Myotub-related=PU(14.0=90.6)


Main Inclusion Isoform:


Main Skipping Isoform:
ENSMUST00000022563fB2578


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGGTTGAGGGAGTTC
R:
CAGTTGCCAGTTTGCATTGGG
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types