BtaEX6056670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36616345-36619804:-
Coord C1 exon
chr12:36619547-36619804
Coord A exon
chr12:36616513-36616638
Coord C2 exon
chr12:36616345-36616433
Length
126 bp
Sequences
Splice sites
3' ss Seq
AAGGCTCTTCTGTGTCGCAGATG
3' ss Score
7.62
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CATTTAAGGAAATTAGAAATGCGTTTGATTTGTTTAAATTAACTCCAGAAGAAAAAAATGATTTTCCTGAGAATAATCGGAAGAGAGATGAAATACCGCCAGACTATAAAGTCACAGAAGACCACAAAGCCAAGGAAAACAAGCCGTTACTTAAAGAAAGAAGAAATACAAGAGATGAGACTGACACGTGGGCATATATAGCTGCAGAAGGTGACCAAGAAGTTCTGGACAGCGCGATCCGAGTGGAGGAGAGTCCTG
Seq A exon
ATGGCAAACAGCAGGTTCTGAGTCTGGGCATGGATCTGCAGCTGGAGTGGATGAGACTGGAGGACTTCCAGAAGCATCTTGATGGAGAAGATGAGAATGTTACTACAGCGGATGTGATTCCAAGCA
Seq C2 exon
ATTTATTGAGGGATGCTGTGAAAAATGGGGATTATATTACTGTGAAGGTTGCACTTAACTCAAGTGAAGAATATAACCTGGACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922-'12-13,'12-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=0.349 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGAGAGATGAAATACCGCC
R:
TGAGTTAAGTGCAACCTTCACAGT
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]