HsaEX6039434 @ hg19
Exon Skipping
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:29810]
Coordinates
chr13:20224143-20233429:+
Coord C1 exon
chr13:20224143-20224400
Coord A exon
chr13:20233135-20233260
Coord C2 exon
chr13:20233341-20233429
Length
126 bp
Sequences
Splice sites
3' ss Seq
AAGGCTATTGTGTGTTCCAGATG
3' ss Score
7.32
5' ss Seq
GTAGTGAGT
5' ss Score
5.8
Exon sequences
Seq C1 exon
CACTTAAGGAAATCAGAAATGCATTTGATTTATTTAAATTAACTCCAGAAGAAAAAAATGATGTTTCTGAGAATAATCGGAAAAGGGAAGAAATACCACTGGATTTTAAAACCATAGACGATCACAAAACCAAGGAAAACAAACAGTCACTTAAAGAAAGGAGAAACACCAGAGACGAAACGGATACTTGGGCATACATTGCTGCAGAAGGTGATCAGGAGGTTTTAGACAGCGTGTGCCAAGCAGATGAGAATTCAG
Seq A exon
ATGGCAGGCAGCAGATTCTGAGTTTGGGCATGGACCTGCAGTTGGAATGGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAAGATGAGAATTTTGCTGCAACAGATGCAATTCCAAGTA
Seq C2 exon
ATGTGTTAAGGGATGCTGTGAAAAATGGGGATTATATTACTGTAAAAGTTGCACTTAATTCAAATGAAGAATATAACCTGGACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.772 A=0.274 C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(28.4=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGGATTTTAAAACCATAGACG
R:
TCTTGGTCCAGGTTATATTCTTCA
Band lengths:
252-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)