DreEX6036007 @ danRer10
Exon Skipping
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21661871-21665633:-
Coord C1 exon
chr9:21665147-21665633
Coord A exon
chr9:21662059-21662181
Coord C2 exon
chr9:21661871-21661959
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTTTGTGTGACAGACA
3' ss Score
9.33
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AAATCAGTGCCACGATCCAGTCAGAGTCCCATCTCCATGGAGGTTGATGAGAAACAGGAGAAGGGATCATCAGAGTTAGAAAAAAGTGAAAAATCAGATGAGCCGAACTTCAAATCTAAGGAGGAATTGCAACGGGAGCAGAGAGAAGAGGAGCAAAGGAAGAGGAAAGAGAAGATGGAAGAAGAAGAGAGAAAAAGGAAAGAAAGGATCGAAGAAGAAGAGAGAAAGAAGAAAGAAAGAATAGAGGAAGCACAGCGGGAGAGAAAAGCACGCCTGGAGGAGGCACAGAGATTTGCAGAGGAGGCCCGGCAAGAGCTAGAAAGGAAGTCTATGGCTGAGTCAATCGTGTCTCCAGACTCTACAGAAGACTCCAGGTGGAAGGACAAGAGGAGGAAAAGGAGGGATGACAGTGAATCACGGGTTTTCACCACCTGCGATGACAATCAGGACTCTCAGGAGACTGTGGAACGCTCAGACAAAACTCCTG
Seq A exon
ACAGGGGACCACCATCCCTTAATCTTGGCGTTGAGCTCAAGCTAGACTGGATGACACTGGAGGACTTTCAGAAACACTTGAATGGAGAGGATGAAAATCTCTCTCCGCTAGCCTTAACACCCA
Seq C2 exon
CCGAGCTACGAGAAGCAGTGAAGAACGGGAATTACTTGGCGGTGAAACGTGCTCTTAGTTCAAAAGAGGACTACAATCTGGACCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=0.619 C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138571=Ank_5=PU(16.7=30.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGCACAGAGATTTGC
R:
ACCGCCAAGTAATTCCCGTTC
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]