MmuEX6041781 @ mm9
Exon Skipping
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:57297401-57304087:+
Coord C1 exon
chr14:57297401-57297655
Coord A exon
chr14:57303795-57303920
Coord C2 exon
chr14:57303999-57304087
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATGCCTTTGTATGTCCCAGATG
3' ss Score
8.12
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
CATTTAAGGAAATCAGAAATGCATTTGATTTATTTAAAAAAACAACAGAAGAAAAAAATGATGTTCTTGAGAATAATTCAAAAAGAGAAGAAATATCACTGGATTCTAAAATTATGAATGATAACAAAACCAAGGACAAGTGTTCACTTAAAGAAAAAAGAAATACTCGAGATGAGACTGACACTTGGGCATACATTGCTGCAGAAGGGGATCAGGAAGTTTCAGACAGTGTATGCCAAACAGATGAGACGTCTG
Seq A exon
ATGGCAGGCAACCAGTTTTGAGTTTGGGTATGGACCTGCAGCTGGAGTGGATGAAATTAGAAGATTTTCAGAAGCATCTGGATGGGGAAGATGAGCCCTTTATCACAACAAACAGGATTCCAAATA
Seq C2 exon
ATTTGTTGAGGGATGCTGTGAAAAATGGAGATTATATTGCTGTGAAGGTTGCACTGAACTCAAATGAAGAATACAACTTGGATCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.256 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(28.4=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAATCAGAAATGCATTTGATTT
R:
TTCACAGCATCCCTCAACAAA
Band lengths:
272-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: