GgaEX1036838 @ galGal4
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178476621-178477589:-
Coord C1 exon
chr1:178477344-178477589
Coord A exon
chr1:178476795-178476920
Coord C2 exon
chr1:178476621-178476709
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTATAAATATGATAGATG
3' ss Score
3.97
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GCTACAAGGACATCAAAAGTGCACTTGACATGTTTAATGTAGCTTCAGAAGAAAAAAAGGAATACTCTGAGAATAACTGCAAAAGAGAAGAACCCTCGCTAGAATATAAATTCATAGAAGAATTAAAATTAAAAGACAGCAAAGTGCACAAGGAGAGGAGGATAAAAGATGAAGCAGAAACATGGAATTACGTTGCTGCAGGAGGTGGTCGAGAAGTAGTGGATGTGTGTCACATGGAGAACTCTG
Seq A exon
ATGGCAAACAACAAGTCTTGAGTTTGGGTATGGACATGCAGTTAGAATGGCTAACGCTAGAAGACTTTCAGAAACATCTCGATGGAGAAGATGAGAATCACATCTCAGCAGAACCGATATCCAGTA
Seq C2 exon
CACTTCTGAGGGATGCTGTCAAAAGTGGAGATTATATGACAGTAAAGATGGCACTTTCTTCAAGCGAGGAATATAATCTGGATCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145-'16-14,'16-12,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=0.244 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(28.4=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAAAGAGAAGAACCCTCG
R:
TTCCTCGCTTGAAGAAAGTGCC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]