MmuEX6041781 @ mm10
Exon Skipping
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:56678564-56685250:+
Coord C1 exon
chr14:56678564-56678818
Coord A exon
chr14:56684958-56685083
Coord C2 exon
chr14:56685162-56685250
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATGCCTTTGTATGTCCCAGATG
3' ss Score
8.12
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
CATTTAAGGAAATCAGAAATGCATTTGATTTATTTAAAAAAACAACAGAAGAAAAAAATGATGTTCTTGAGAATAATTCAAAAAGAGAAGAAATATCACTGGATTCTAAAATTATGAATGATAACAAAACCAAGGACAAGTGTTCACTTAAAGAAAAAAGAAATACTCGAGATGAGACTGACACTTGGGCATACATTGCTGCAGAAGGGGATCAGGAAGTTTCAGACAGTGTATGCCAAACAGATGAGACGTCTG
Seq A exon
ATGGCAGGCAACCAGTTTTGAGTTTGGGTATGGACCTGCAGCTGGAGTGGATGAAATTAGAAGATTTTCAGAAGCATCTGGATGGGGAAGATGAGCCCTTTATCACAACAAACAGGATTCCAAATA
Seq C2 exon
ATTTGTTGAGGGATGCTGTGAAAAATGGAGATTATATTGCTGTGAAGGTTGCACTGAACTCAAATGAAGAATACAACTTGGATCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184-'14-20,'14-12,25-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.256 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(28.4=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTAATCAGAACAGTTAGGCA
R:
AGGTAGCCAAATGCCTCATCA
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types