BtaEX6056677 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36723125-36727198:-
Coord C1 exon
chr12:36727067-36727198
Coord A exon
chr12:36725668-36725869
Coord C2 exon
chr12:36723125-36723194
Length
202 bp
Sequences
Splice sites
3' ss Seq
AATTACTTGTTTTTTCTCAGTGC
3' ss Score
7.63
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
ATGACTGTGGGAATCTTCGCAAACTGTACCTTCTGTTTGAAAGCCAAGCACTTAACTCGTCAACAGAAGAGAAAACTACAAACTGATATTAAGGAAAATGGTGGAAATTTTTCCTTTTTATTAAATGCTCAG
Seq A exon
TGCACACATGTAATCTTAGACAATGCTGATGTTCTGAGCCAGTATCAGCTGAAGTCTATTCAGAAGAACCATATTCTTATTGCAAACCCAGATTTTGTATGGGAATCTATCAAAGAAAGAAGACTGCTGGATACAAAGATTTATGGTCCCAGTGAGTCACTGGACATCACATCAGCTTCCAGTGAAGAATGGAGCAGCCCTA
Seq C2 exon
AAATGGAAATGAATGATTCTTCATTCCTGGACAGTTCCACAGAGAAGGAGAACACTGTTGAACTCACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.074 C2=0.417
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PU(53.1=97.7)
A:
PF0053321=BRCT=PD(44.4=52.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGTGGGAATCTTCGC
R:
AGTGAGTTCAACAGTGTTCTCCT
Band lengths:
200-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]