MmuEX6041775 @ mm9
Exon Skipping
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:57202996-57206649:+
Coord C1 exon
chr14:57202996-57203128
Coord A exon
chr14:57204394-57204589
Coord C2 exon
chr14:57206586-57206649
Length
196 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGTTTATCCGCAGTGC
3' ss Score
9.28
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GATGACTTTAGGAATCTTTGCAAATTGTATATTCTGCTTGAAGGTCAAGTACTTACCTCGTCAGCAGAAGAAAAAGCTGCAAACTGATATTAAGGAAAATGGCGGAAAGTTTTCCTTTTTATTAAACCCTCAG
Seq A exon
TGCACACATGTCATCGTAGACAGTGCTGACGTCCTGAGTCGGTGTCATCTGAACTCCATCCAAAAGAACGATGTGCAGATTGCCAACCCAGCATTCATCCAGGACTCTGTGAGACAGAGGAGACTCCTGGATGTGAGGAATTATGATCCTCTGTCGCCGGCTCCAGCAGCACCACCAGCTGAAAGGAGCAGGTCTG
Seq C2 exon
AAGTGCAATCAGAATATCTGCCTTCAGACAACACCCCAGAGAAGGAAAACACCGAAGTCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509-'1-4,'1-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.258 C2=1.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PU(53.1=97.7)
A:
PF0053321=BRCT=PD(44.4=54.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTTAGGAATCTTTGCAAATTGT
R:
TCAGTGACTTCGGTGTTTTCCT
Band lengths:
195-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: