GgaEX1036844 @ galGal4
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178526666-178529933:-
Coord C1 exon
chr1:178529801-178529933
Coord A exon
chr1:178528040-178528235
Coord C2 exon
chr1:178526666-178526789
Length
196 bp
Sequences
Splice sites
3' ss Seq
AATTCTAACTTGTCTTTCAGTGT
3' ss Score
8.52
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GAGAGCAATGACAATCTTTGCAAACTGTGTGTTCTTTATTAAACTGAAGTACTCATCCATTCAGAAGAAGAACAGCCTGAAAGCATGTATAGAAGAAAATGGTGGAGCAATTGATTTTGTGCTTAATAACAAA
Seq A exon
TGTACACATGTTCTTGTGGATAATGCCAATGTCCTCAGTCATCACAATCTAAAAATTACTCAGAAATATCAGCTGCCTGTTTTATATGCAGATTTTGTCTGGAAATCAGTTGAAAATGGGAAGCTTTTAGTAACTGATGCATTTGAGGTTAATACATCACAAGGCAACATTTCTAACCAATGGCCAGGTGGACATG
Seq C2 exon
GTTTGGAAGACTTGTCATCTTCTGAAAATAAAATTGCCACAAATCAAAACGAAAGCAATGACTCCAATCTTACTGTTATAGGAGAAAGTGACAAGAGAATTGAATTCAAAGTGGGAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAATCTTTGCAAACTGTGTGT
R:
TGAGAGTTCCCACTTTGAATTCA
Band lengths:
248-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]