HsaEX0045607 @ hg19
Exon Skipping
Gene
ENSG00000102699 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:271]
Coordinates
chr13:25074454-25077915:-
Coord C1 exon
chr13:25077783-25077915
Coord A exon
chr13:25075771-25075972
Coord C2 exon
chr13:25074454-25074520
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTGACTCTTTTTTTCCTTAGTGC
3' ss Score
9.12
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GATGGTGATGGGAATCTTTGCAAATTGTATCTTCTGTTTGAAAGTGAAGTACTTACCTCAGCAGCAGAAGAAAAAGCTACAAACTGACATTAAGGAAAATGGCGGAAAGTTTTCCTTTTCGTTAAATCCTCAG
Seq A exon
TGCACACATATAATCTTAGATAATGCTGATGTTCTGAGTCAGTACCAACTGAATTCTATCCAAAAGAACCACGTTCATATTGCAAACCCAGATTTTATATGGAAATCTATCAGGGAAAAGAGACTCTTGGATGTAAAGAATTATGATCCTTATAAGCCCCTGGACATCACACCACCTCCTGATCAGAAGGCGAGCAGTTCTG
Seq C2 exon
AAGTGAAAACAGAAGGTCTATGCCCGGACAGTGCCACAGAGGAGGAAGACACTGTGGAACTCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.235 C2=0.870
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PU(53.1=97.7)
A:
PF0053321=BRCT=PD(44.4=52.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGATGGGAATCTTTGCA
R:
GTGAGTTCCACAGTGTCTTCCT
Band lengths:
197-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)