HsaEX0045607 @ hg38
Exon Skipping
Gene
ENSG00000102699 | PARP4
Description
poly(ADP-ribose) polymerase family member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr13:24498116-24512810:-
Coord C1 exon
chr13:24512706-24512810
Coord A exon
chr13:24501633-24501834
Coord C2 exon
chr13:24498116-24498229
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTGACTCTTTTTTTCCTTAGTGC
3' ss Score
9.12
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CGCCCGCCCAGCCCCGGGGGCAGGGAGAGCCTAGATTACGGAAGTACCGCGAGCAAGGAGCGCGGAATCGGGGAGCGTCCGGAGCTAGCTGGATCCTCTAGGCAG
Seq A exon
TGCACACATATAATCTTAGATAATGCTGATGTTCTGAGTCAGTACCAACTGAATTCTATCCAAAAGAACCACGTTCATATTGCAAACCCAGATTTTATATGGAAATCTATCAGGGAAAAGAGACTCTTGGATGTAAAGAATTATGATCCTTATAAGCCCCTGGACATCACACCACCTCCTGATCAGAAGGCGAGCAGTTCTG
Seq C2 exon
GTGGGAATGGAGGGAGGCCAGGAAGCTGTGGTGGTGGAGCTTCAGTGTTCGCGGGACTCCAGGGACTGTCCTTTCCTGATATCCTCACACTTCCTCCTGGATGATGGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699_MULTIEX2-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0053321=BRCT=PD(44.4=52.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAGAGCCTAGATTACG
R:
TCCATGCCATCATCCAGGAGG
Band lengths:
199-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development