DreEX6035895 @ danRer10
Exon Skipping
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20673372-20674397:+
Coord C1 exon
chr9:20673372-20673511
Coord A exon
chr9:20673698-20673893
Coord C2 exon
chr9:20674283-20674397
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTATATCTTCTCCAGTGC
3' ss Score
8.87
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACACTGACAGCATCATGACAGTGTTTGAAAACTGTACTGTTGTGTTTGATGTGAAGAATGTGCCTTTTAAAGAGAAGCAGAAGCTGAAATCAGCTCTTCTGGAGAATGGAGGAAACATCTCCTACACCATCAACAAAGAG
Seq A exon
TGCTCTTTTGTGGTCACCAGCAGTGTGAATGACCTGAGCAGTAACAGGCAGCGCAGCATCCAGAAGCTCCAGATCCCGGTGGTTGGAACGCAGTATGTGTGGAGTTGTGTGGATGAAGGACATCTTCTGCCTTTGACGGAGCATAATTTAACCCCACAGCTGTCATATCCAACCAATGAATCCCTCCCTTCTCCAG
Seq C2 exon
GGGTTATAGTGTCGACCAAGATACTAGAAAAAAATAAGTTCAAAGGTCAGCCTGATCTCCCAAACGCAGAGGTTGAGATTCTTGAGAAGGGTGGACCTCGTGCTAGCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.077
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PU(53.1=89.6)
A:
PF0053321=BRCT=PD(45.7=56.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACAGCATCATGACAGTGT
R:
ATTTGCTAGCACGAGGTCCAC
Band lengths:
249-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]